Genomics

Complete solutions, from experimental design to statistical analysis and interpretation of results.

The Genomics Platform offers a wide range of scientific services to research groups, hospitals, companies and public and private laboratories. It also collaborates in scientific research projects and serves as a meeting point between the scientific development of the university and public spheres and the technological demand of the private sector.

  • Highly qualified expert and professional team
  • Most innovative technologies and equipment
  • More than 15 years of experience
  • Over 11 years of specialization in massive sequencing
  • More than 100 research groups served each year
  • More than 60,000 samples tested each year
  • More than 350 projects attended each year

Services

Complete solutions suitable for each project, from experimental design to statistical analysis and bioinformatics interpretation of the results obtained

Massive Sequencing (NGS)
  • DNA Sequencing: de novo / re-sequencing / targeted sequencing
  • RNA and smallRNA Sequencing: Transcriptomics/Gene Expression
  • Metagenomics: Global Population Analysis / 16S Amploon Sequencing / STIs / 18S
Single Cell Sequencing
  • Chromium Libraries Setup
  • Visium Libraries Setup
Real-time PCR (qPCR)
  • Gene expression studies
  • MicroRNA expression analysis
  • Genotyping with Taqman probes
  • Statistical analysis based on Statminer® software
Digital PCR (dPCR)
  • Detection of Rare Mutations
  • Copy Number Variation (CNVs) Analysis
BioAnalyzer (BA)
  • Analysis of total RNA or RNA fractions, measurement of INR
  • DNA analysis: electrophoretic profiling and concentration estimation
DNA/RNA Quantification (PG-RG)
  • Fluorimetric measurement (PicoGreen/ RiboGreen) • Fluorimetry-based DNA quantification (PicoGreen)
  • Quantification of DNA and RNA by spectrophotometry (nanoDrop)

Requests

Basic information on Data Protection.

Responsible: Fundación Parque Científico de Madrid. – CIF G-83077891
Purpose: To manage the business relationship with you.
Legitimation: When we use your data we rely on the consent you give us when you contact us.
Recipients: Except for contractual or judicial obligations, data communications to other entities are not foreseen.
Rights: Access, rectify and delete data, as well as other rights, as explained in the additional information.
Additional Information: You can consult additional and detailed information on Data Protection on our website: Privacy Policy

Publications

Scientific articles in which the Genomics Platform has participated
Authors Year Magazine Theme PDF
Wesselink et al. 2012 J. Bacteriol. Genomic sequence of Klebsiella pneumoniae OXA-48
Singh et al. 2013 PLOS Genetics Motility of Bacillus subtilis by plasmid conjugation
Fernández et al. 2018 Oncotarget Lipid-related genes in colon cancer
Lanza et al. 2018 Microbiome Analysis of the resistome in metagenomic samples
López-Camacho et al. 2018 J. Global Antimicrobial Resistance Population structure of a Klebsiella pneumoniae outbreak
Bravo-Alonso et al. 2019 J. Clin. Medicine Genetic variants associated with lactic acidosis
Prieto-Potín et al. 2020 Peer J. Validation of a gene panel in cancer
Schoorlemmer et al. 2020 Epigenomics DNA methylation in preterm delivery
Trilla-Fuertes et al. 2020 Mol. Cell Proteomics Genomics and Proteomics in Anal Carcinoma
Trilla-Fuertes et al. 2020 Transl. Oncology Overview of mutations present in anal carcinoma
Trilla-Fuertes et al. 2021 Sci. Reports Genetic Variants in Anal Carcinoma Patients Treated with Panitumumab
Herreros-Villanueva et al. 2022 Gastroenterology and Hepatology Mutations in plasma from pancreatic cancer patients Link to the original article by Herreros-Villanueva et al. (2022)
Trilla-Fuertes et al. 2023 Int. J. Molecular Sc. Prediction of anti-PD1 therapy response in anal carcinoma patients Download link
Trilla-Fuertes et al. 2023 Cancer Biomarker for anal carcinoma diagnosis Download link
Trilla-Fuertes et al. 2023 Cancers Response to PD-1 inhibitors in advanced melanomas Download link
Fdez. de las Peñas et al. 2024 Biomedicines Post-COVID-19 pain and changes in DNA methylation patterns Download link
García-Tenorio et al. 2025 Human Cell Gene deactivation for propionic acidemia using CRISPR-Cas9 Download link
AuthorsYearMagazineThemePDF
Fierro-Fernández et al.2015EMBO ReportsFibrosis suppression by miR-9-5p
Doncel-Pérez et al.2016J. Immunol.EGR2 in Gullian-Barré syndrome
Herrera et al.2018Molecular CancerNon-coding exosomal RNA in colorectal cancer
Llorens et al.2018BMC Genomics Anisakis gene expression patterns
Alonso-Hearn et al.2019Sci. ReportsCXCL8 Signaling in Mycobacterium-Infected Cattle
Fierro-Fernández et al.2019FASEB J.RNA regulation by miR-9-5p in renal fibrosis
Díaz et al.2020Int. J. Mol. SciencesmiR-7641 on hyalinizing vasculopathy
Llorens et al.2020Clin. Oral Invest.RNA expression profile in proliferative leukoplakia
Puente-Santamaría et al.2021bioRxivSearch for transcription patterns in hypoxiaLink to the original article by Puente-Santamaría et al. (2021)
López et al.2021Nature GeneticsSARS-CoV2 sequencing in SpainLink to the original article by López et al. (2021)
Ruiz-Rodríguez et al.2021mBioIdentification of mutations in the SARS-CoV2 genomeDownload link
Martínez-González et al.2022PathogensIdentification of mutations in SARS-CoV-2Link to the original article by Martínez-González et al. (2022)
Martínez-González et al.2022J. Clinical InvestigationIdentification of mutations in SARS-CoV-2Link to the original article by Martínez-González et al. (2022)
Opazo-Ríos et al.2022FrontiersMicroRNAs regulated in diabetic nephropathy in ob/ob miceLink to the original article by Opazo-Ríos et al. (2022)
Llorens-Revull et al.2023Int. J. Molecular Sc.Methods for microRNA analysis in extracellular vesiclesLink to the original article by Opazo-Ríos et al. (2022)
Badia-Bringué et al.2024Sci. ReportsImmune regulation by microRNAs in cattle infected with MycobacteriumLink to the original article by Opazo-Ríos et al. (2022)
Authors Year Magazine Theme PDF
Sánchez-Diz et al. 2009 Pharmacogenics J. CYP2C9 gene polymorphisms
Rodríguez-Sainz et al. 2010 J. Clin. Virol. HIV c-DNA measurement
Vargas et al. 2014 Mol. Oncology Metabolic syndrome in colorectal cancer
Vargas et al. 2015 Oncotarget Lipid Metabolic Signature in Colorectal Cancer
Rivera-Barahona et al. 2017 Sci. Reports MicroRNA expression in propionic acidemia
Miguel et al. 2021 Redox Biology MicroRNA expression in renal fibrosis
Tarancón-Díez et al. 2022 Frontiers in Immunology Profiles of miRNAs in children undergoing antiretroviral treatment for HIV
Rey-Serra et al. 2023 Life Sci. Alliance Genes related to kidney damage
Badia-Bringué et al. 2024 Scientific Reports MicroRNA modulation in bovine paratuberculosis
Glez.-Gil et al. 2024 BMC Veterinary Research Proneurogenic actions of follicle-stimulating hormone
Authors Year Magazine Theme PDF
Robles-Vera et al. 2019 Nutrients Impact of Vitamin D on the Microbiome
Arcos et al. 2021 Microorganisms Bacterial diversity in Anisakis L3 larvae

We kindly ask that publications including results obtained in collaboration with the Genomics Unit of the Madrid Science Park Foundation cite this contribution as follows:

Acknowledgments/Reconocimientos:

Genomics Unit, Madrid Science Park Foundation, Spain

Unidad de Genómica, Fundación Parque Científico de Madrid, España

When appropriate, our collaboration could be described as:
“Data were generated using well-established, standardized procedures.”

Cuando corresponda esta participación puede expresarse como:
“Datos generados mediante procedimientos normalizados establecidos.”

Projects

Name Years Participating Entities Topic Funding
AgroGenDetect 2022-2024 CSIC, Genomics Platform FPCM, Syntech Research Spain S.L., Microgaia Biotech S.L. Development of an early pathogen detection system capable of infecting consumable plants Logo of the funding entities for the AgroGenDetect project
PanCaTest 2022-2024 Advanced Marker Discovery S.L., NasasBiotech S.L., CIBER, Fund. Inv. Biomédica Hosp. Univ. Ramón y Cajal, Genomics Platform FPCM Development of a plasma biomarker signature useful for the diagnosis of pancreatic cancer Logo of the funding entities for the AgroGenDetect project

Outreach

Outreach articles and materials from the Genomics Museum of the Park.

Authors Year Journal Topic PDF
Ramos-Ruiz 2011 Encuentros Interdisciplinares Genomics
Ramos-Ruiz 2013 SEBMM Genomic Sequencing
Ramos-Ruiz et al. 2014 Comprehensive Analytical Chemistry 64 (Elsevier) Review of Genotyping Technologies
Ramos-Ruiz et al. 2015 Mediterráneo Económico Genomics in the Agri-food Sector
Ramos-Ruiz et al. 2023 Estudios Multidisciplinares The Expanded Capabilities of Science Parks: The Case of a Genomics Unit
Description PDF
Complete materials
Introductory panel
Introductory panel: What size is our genome? (additional material via QR)
Introductory panel: A genome is like a book (additional material via QR)
Equipment 1: ABIPRISM 3700 DNA Analyzer – the first fully automated sequencer
Equipment 1: polyacrylamide gel (additional material via QR)
Equipment 2: ABIPRISM 7900 HT – one genome, one million possibilities
Equipment 2: how PCR works (additional material via QR)
Equipment 2: types of RNA (additional material via QR)
Equipment 3: FLX 454 – the new generation of genomics
Equipment 3: pyrosequencing (additional material via QR)
Equipment 4: GAAIIx System – a device here to stay
Equipment 4: sequencing by synthesis (additional material via QR)

SPEAKERS

Space, defense, and semiconductors

Foto de Francisco Marín de CITT Tecnologías del Espacio
Francisco Marín, Director CITT Space Technologies
Daniel Granados, Director CITT Semiconductors
Foto de David Gómez de Tekniker
David Gómez, Director of Advanced Manufacturing Technologies Tekniker
Luis Benaite, Director of Electronic Warfare Laboratory Funditec
Paloma Domingo, Deputy Director CSIC Foundation
José Antonio González, Co-founder YPlasma
Foto de Daniel González, CEO de Nanostine
Daniel González, CEO Nanostine
Nicolai Lavroff, Business Development G2 Zero

Smart health

Foto de Micaela Martelli

Micaela Martelli, Director of Sectorial Solutions Telefónica

Foto de Ana Isabel González de la Com. de Madrid
Ana Isabel González, Head of Health Research Area Community of Madrid
Foto de Rosa Lillo
Rosa Lillo, Director IBiDat – Big Data Institute UC3M
Foto de Ángel Sánchez, de Quirónsalud
Ángel Sánchez, Medical Director Quirónsalud
Foto de Marta Pedrosa, de Cinfa
Marta Pedrosa, Innovation Department Cinfa
Foto de Felip Miralles de Eurecat
Felip Miralles, Director of Health Technologies Eurecat
Clément Destoumieux, Spanish Startups Association
Jesús Prada, CEO Horus ML
Raúl Alelú, CEO Healthy Minds
Foto de Blanca Caballero, de Nanological

Blanca Caballero, CEO Nanological

Carolina Gago, COO IOT Lenses

María Urbano, CEO EvoEnzyme

Energy vectors and circularity

María Cano, Node Director Greentech Retech
Foto de Pedro Pereira, fundador de Nanostech
Pedro Pereira, CTO NanosTech and Professor Emeritus
Foto de Jesús Montes de Moeve
Jesús Montes, Energy Technology Intelligence Moeve
Foto de Lidia Caramazana de Naturgy
Lidia Caramazana, Innovation Manager Naturgy
Miquel Rovira, Director of Sustainability Eurecat
Foto de Roberto Clemente, CEO de Gnanomat
Roberto Clemente, CEO Gnanomat
Foto de Rafael Mombiedro, CEO de Empirical Advances
Rafael Mombiedro, CEO Empirical Advances

María Urbano, CEO EvoEnzyme

Institutions

Foto de Marina Villegas de la Com. de Madrid
Marina Villegas, General Director of Research and Technological Innovation Community of Madrid
Foto de Óscar Romera del Ayto. Madrid
Óscar Romera, General Coordinator of Economy, Trade and Consumer Affairs Madrid City Council
Foto de Marta del Castillo Vázquez, Dir.ª Gral. Parque Científico de Madrid
Marta del Castillo, General Director Madrid Science Park
Félix Zamora, Vice-Rector for Transfer, Innovation and Culture UAM
Javier Etxabe, Head of Entrepreneurship and Innovation Area, Vice President for Innovation and Transfer CSIC
Carlos Herranz, Coordinator of the Secretariat of State for Digitalization and AI Ministry of Digital Transformation
Foto de Andrés Ubierna de CDTI
Andrés Ubierna, Head of Capitalization and Technology Transfer Division CDTI
Ignacio Liñán, Communications and Promotion Department Enisa
Foto de Juan Rodríguez de ClarkeModet (Arosa I+D)
Juan Rodríguez, Innovation Sales Director ClarkeModet (Arosa I+D)

Eduardo Díaz, Director of EBT Office Fund. Madri+d

Mª Inmaculada López, Director Compluemprende